STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK98316.1Hypothetical protein. (440 aa)    
Predicted Functional Partners:
SEK98287.1
Cytochrome P450.
 
 
  0.963
SEL26764.1
Flagellar basal-body rod protein FlgF; Belongs to the flagella basal body rod proteins family.
    
   0.788
SEK79751.1
Glycosyl transferase family 2.
  
 
   0.784
SEK79772.1
Glycosyl transferase family 2.
  
 
   0.783
SEL24922.1
Core-2/I-Branching enzyme.
  
 
   0.782
SEK51235.1
Capsular polysaccharide export protein.
 
     0.776
SEK79729.1
Core-2/I-Branching enzyme.
  
     0.768
SEL24952.1
Sulfotransferase family protein.
  
     0.767
SEK76826.1
Hypothetical protein.
  
     0.764
SEK79701.1
LPS sulfotransferase NodH.
  
     0.763
Your Current Organism:
Roseovarius nanhaiticus
NCBI taxonomy Id: 573024
Other names: CCTCC AB 208317, DSM 29590, LMG 24840, LMG:24840, MCCC 1A03543, R. nanhaiticus, Roseovarius nanhaiticus Wang et al. 2010, Roseovarius sp. NH52J, strain NH52J
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.