Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEK72021.1 | SEL01961.1 | SAMN05216208_1793 | SAMN05216208_2546 | (2-(2, 4-dihydroxy-6-methylphenyl)-2-oxoethyl)-4-hydroxy-2-pyrone synthase. | Putative mRNA 3-end processing factor. | 0.905 |
SEK72021.1 | SEL16222.1 | SAMN05216208_1793 | SAMN05216208_2951 | (2-(2, 4-dihydroxy-6-methylphenyl)-2-oxoethyl)-4-hydroxy-2-pyrone synthase. | Flp pilus assembly protein TadD, contains TPR repeats. | 0.822 |
SEK72021.1 | SEL31221.1 | SAMN05216208_1793 | SAMN05216208_3405 | (2-(2, 4-dihydroxy-6-methylphenyl)-2-oxoethyl)-4-hydroxy-2-pyrone synthase. | Hypothetical protein. | 0.822 |
SEK72021.1 | rpoA | SAMN05216208_1793 | SAMN05216208_0633 | (2-(2, 4-dihydroxy-6-methylphenyl)-2-oxoethyl)-4-hydroxy-2-pyrone synthase. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.869 |
SEK72021.1 | rpoB | SAMN05216208_1793 | SAMN05216208_0672 | (2-(2, 4-dihydroxy-6-methylphenyl)-2-oxoethyl)-4-hydroxy-2-pyrone synthase. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.928 |
SEK72021.1 | rpoZ | SAMN05216208_1793 | SAMN05216208_0715 | (2-(2, 4-dihydroxy-6-methylphenyl)-2-oxoethyl)-4-hydroxy-2-pyrone synthase. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.916 |
SEL01961.1 | SEK72021.1 | SAMN05216208_2546 | SAMN05216208_1793 | Putative mRNA 3-end processing factor. | (2-(2, 4-dihydroxy-6-methylphenyl)-2-oxoethyl)-4-hydroxy-2-pyrone synthase. | 0.905 |
SEL01961.1 | SEL01991.1 | SAMN05216208_2546 | SAMN05216208_2547 | Putative mRNA 3-end processing factor. | DNA ligase-1. | 0.999 |
SEL01961.1 | SEL16222.1 | SAMN05216208_2546 | SAMN05216208_2951 | Putative mRNA 3-end processing factor. | Flp pilus assembly protein TadD, contains TPR repeats. | 0.817 |
SEL01961.1 | SEL31221.1 | SAMN05216208_2546 | SAMN05216208_3405 | Putative mRNA 3-end processing factor. | Hypothetical protein. | 0.817 |
SEL01961.1 | gpmI | SAMN05216208_2546 | SAMN05216208_1685 | Putative mRNA 3-end processing factor. | Phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate. | 0.986 |
SEL01961.1 | polA | SAMN05216208_2546 | SAMN05216208_3194 | Putative mRNA 3-end processing factor. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.909 |
SEL01961.1 | rpoA | SAMN05216208_2546 | SAMN05216208_0633 | Putative mRNA 3-end processing factor. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.864 |
SEL01961.1 | rpoB | SAMN05216208_2546 | SAMN05216208_0672 | Putative mRNA 3-end processing factor. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.872 |
SEL01961.1 | rpoZ | SAMN05216208_2546 | SAMN05216208_0715 | Putative mRNA 3-end processing factor. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.871 |
SEL01961.1 | sbcD | SAMN05216208_2546 | SAMN05216208_3402 | Putative mRNA 3-end processing factor. | Exodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.842 |
SEL01991.1 | SEL01961.1 | SAMN05216208_2547 | SAMN05216208_2546 | DNA ligase-1. | Putative mRNA 3-end processing factor. | 0.999 |
SEL01991.1 | polA | SAMN05216208_2547 | SAMN05216208_3194 | DNA ligase-1. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.997 |
SEL01991.1 | rpoA | SAMN05216208_2547 | SAMN05216208_0633 | DNA ligase-1. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.802 |
SEL01991.1 | rpoB | SAMN05216208_2547 | SAMN05216208_0672 | DNA ligase-1. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.799 |
page 1 of 4