STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL03832.1PAP2 superfamily protein. (374 aa)    
Predicted Functional Partners:
rplF
LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.784
SEK43074.1
Cytochrome P450.
    
  0.750
SEK98287.1
Cytochrome P450.
    
  0.750
SEK26682.1
malonyl-CoA/methylmalonyl-CoA synthetase.
    
  0.728
SEK53034.1
fatty-acyl-CoA synthase/long-chain acyl-CoA synthetase.
    
  0.728
SEL03892.1
fatty-acyl-CoA synthase.
    
  0.728
SEK91752.1
Acyl transferase domain-containing protein.
   
 
 0.585
SEL13768.1
Uncharacterized membrane protein.
  
     0.509
SEL25884.1
Superfamily II DNA or RNA helicase.
  
 
   0.467
SEK70288.1
Capsular exopolysaccharide family.
 
   
 0.458
Your Current Organism:
Roseovarius nanhaiticus
NCBI taxonomy Id: 573024
Other names: CCTCC AB 208317, DSM 29590, LMG 24840, LMG:24840, MCCC 1A03543, R. nanhaiticus, Roseovarius nanhaiticus Wang et al. 2010, Roseovarius sp. NH52J, strain NH52J
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