STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL16777.1Citrate lyase subunit beta / citryl-CoA lyase; Belongs to the HpcH/HpaI aldolase family. (268 aa)    
Predicted Functional Partners:
SEL16753.1
Fumarase, class I, homodimeric; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
    
 0.963
SEL20064.1
L-erythro-3-methylmalyl-CoA dehydratase.
 
 
 0.728
SEK75003.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
  
 
 0.652
SEL13634.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
  
 
 0.652
mdh
Malate dehydrogenase (NAD); Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
  
 
 0.640
SEL16423.1
3-methylfumaryl-CoA hydratase.
 
 
 0.626
SEK46324.1
Phosphate acetyltransferase/phosphate butyryltransferase.
  
 
 0.619
SEL16794.1
Crotonobetainyl-CoA:carnitine CoA-transferase CaiB; Belongs to the CoA-transferase III family.
  
 
  0.614
SEL00819.1
Biotin carboxyl carrier protein /biotin carboxylase.
  
 
  0.599
SEL00998.1
propionyl-CoA carboxylase carboxyltransferase subunit.
    
 0.591
Your Current Organism:
Roseovarius nanhaiticus
NCBI taxonomy Id: 573024
Other names: CCTCC AB 208317, DSM 29590, LMG 24840, LMG:24840, MCCC 1A03543, R. nanhaiticus, Roseovarius nanhaiticus Wang et al. 2010, Roseovarius sp. NH52J, strain NH52J
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.