STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL27885.1Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase. (462 aa)    
Predicted Functional Partners:
SEL27913.1
Gamma-glutamyltransferase 1 Threonine peptidase. MEROPS family T03.
 
  
  0.893
SEL28022.1
Peptide/nickel transport system substrate-binding protein.
 
     0.868
SEL27991.1
Peptide/nickel transport system permease protein.
 
     0.841
SEL27983.1
Peptide/nickel transport system permease protein.
 
    0.820
SEL27934.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
     0.814
SEL27958.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
     0.783
SEL28040.1
Transcriptional regulator, IclR family.
 
     0.688
SEK44617.1
Dihydropyrimidine dehydrogenase (NAD+) subunit PreA.
  
 0.670
SEL27834.1
Two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD.
       0.605
SEL27857.1
Two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB.
       0.605
Your Current Organism:
Roseovarius nanhaiticus
NCBI taxonomy Id: 573024
Other names: CCTCC AB 208317, DSM 29590, LMG 24840, LMG:24840, MCCC 1A03543, R. nanhaiticus, Roseovarius nanhaiticus Wang et al. 2010, Roseovarius sp. NH52J, strain NH52J
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.