STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL28240.1Capsular polysaccharide transport system permease protein. (280 aa)    
Predicted Functional Partners:
SEK56231.1
Capsular polysaccharide transport system ATP-binding protein.
 
 0.999
SEL28279.1
Capsular polysaccharide transport system ATP-binding protein.
 
 0.999
SEL28259.1
Capsular polysaccharide transport system permease protein.
 
 
 0.997
SEK56240.1
Capsular polysaccharide transport system permease protein.
 
 
 0.975
SEK51307.1
Capsular polysaccharide export protein.
 
  
 0.960
SEK57914.1
Polysaccharide export outer membrane protein.
 
  
 0.923
SEK51279.1
Polysaccharide export outer membrane protein.
 
  
 0.863
SEL28336.1
UDP-galactopyranose mutase.
 
  
 0.822
SEK96328.1
Polysaccharide export outer membrane protein.
  
  
 0.807
SEK48071.1
Ribosome-dependent ATPase.
    
 0.801
Your Current Organism:
Roseovarius nanhaiticus
NCBI taxonomy Id: 573024
Other names: CCTCC AB 208317, DSM 29590, LMG 24840, LMG:24840, MCCC 1A03543, R. nanhaiticus, Roseovarius nanhaiticus Wang et al. 2010, Roseovarius sp. NH52J, strain NH52J
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.