STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL28776.1ATP-binding cassette, subfamily C. (604 aa)    
Predicted Functional Partners:
SEL28729.1
HlyD family secretion protein.
  
 0.940
SEL28757.1
Ca2+-binding protein, RTX toxin-related.
 
 
 0.919
SEK63032.1
L-glutamine ABC transporter ATP-binding protein.
 
     
0.869
SEK72148.1
HlyD family secretion protein.
  
 0.809
SEK71765.1
Amino acid ABC transporter ATP-binding protein, PAAT family.
 
     
0.808
SEL28800.1
Animal haem peroxidase.
 
 
 0.799
SEL40435.1
Ca2+-binding protein, RTX toxin-related.
  
 
 0.629
SEK79003.1
Hemolysin-type calcium-binding repeat-containing protein.
  
 
 0.602
pstB
Phosphate ABC transporter ATP-binding protein, PhoT family; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.
 
     
0.575
SEK62040.1
Amino acid ABC transporter ATP-binding protein, PAAT family.
 
     
0.560
Your Current Organism:
Roseovarius nanhaiticus
NCBI taxonomy Id: 573024
Other names: CCTCC AB 208317, DSM 29590, LMG 24840, LMG:24840, MCCC 1A03543, R. nanhaiticus, Roseovarius nanhaiticus Wang et al. 2010, Roseovarius sp. NH52J, strain NH52J
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