STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL32002.1Hypothetical protein. (242 aa)    
Predicted Functional Partners:
SEL31978.1
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat.
 
     0.785
der
GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
       0.671
SEL10048.1
Hypothetical protein.
  
     0.628
SEK73079.1
Cell division protein FtsB.
  
     0.612
SEL19640.1
TIGR02302 family protein.
  
     0.593
SEL27623.1
Hypothetical protein.
  
     0.577
SEL13708.1
Hypothetical protein.
  
     0.569
SEK67365.1
Hypothetical protein.
  
     0.554
SEK64865.1
Amino acid/amide ABC transporter substrate-binding protein, HAAT family.
  
     0.553
SEL00877.1
Hypothetical protein.
  
     0.538
Your Current Organism:
Roseovarius nanhaiticus
NCBI taxonomy Id: 573024
Other names: CCTCC AB 208317, DSM 29590, LMG 24840, LMG:24840, MCCC 1A03543, R. nanhaiticus, Roseovarius nanhaiticus Wang et al. 2010, Roseovarius sp. NH52J, strain NH52J
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.