STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL32098.1Hypothetical protein. (113 aa)    
Predicted Functional Partners:
SEK48313.1
Hypothetical protein.
   
   0.905
SEL32117.1
ATP-binding cassette, subfamily B.
       0.824
cpoB
Tol-pal system protein YbgF; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.
 
  
 0.805
SEL19640.1
TIGR02302 family protein.
  
 
 0.699
SEK73280.1
Phosphate ABC transporter substrate-binding protein, PhoT family.
 
 0.690
SEK29173.1
Vitamin B12 transporter.
    
 
 0.605
SEL32145.1
LysM domain-containing protein.
 
     0.562
SEK72965.1
Hypothetical protein.
    
 
 0.508
SEL17082.1
Outer membrane protein (porin).
    
 
 0.508
SEK27994.1
OmpA family protein.
   
 0.501
Your Current Organism:
Roseovarius nanhaiticus
NCBI taxonomy Id: 573024
Other names: CCTCC AB 208317, DSM 29590, LMG 24840, LMG:24840, MCCC 1A03543, R. nanhaiticus, Roseovarius nanhaiticus Wang et al. 2010, Roseovarius sp. NH52J, strain NH52J
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.