STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL32572.1Hypothetical protein. (263 aa)    
Predicted Functional Partners:
SEL32598.1
Uncharacterized membrane protein YfcA.
       0.853
dusA
tRNA-U16,U17-dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs; Belongs to the Dus family. DusA subfamily.
       0.746
SEK94015.1
Hypothetical protein.
  
     0.703
SEK59220.1
Dimethylsulfoniopropionate lyase DddP.
  
     0.672
SEK93985.1
Phenylpropionate dioxygenase, large terminal subunit.
  
     0.541
SEK66213.1
Transcriptional regulator, AlpA family.
  
     0.520
SEL32543.1
Membrane-bound inhibitor of C-type lysozyme.
       0.516
SEK77167.1
Trimethylamine---corrinoid protein Co-methyltransferase; Belongs to the trimethylamine methyltransferase family.
  
     0.503
Your Current Organism:
Roseovarius nanhaiticus
NCBI taxonomy Id: 573024
Other names: CCTCC AB 208317, DSM 29590, LMG 24840, LMG:24840, MCCC 1A03543, R. nanhaiticus, Roseovarius nanhaiticus Wang et al. 2010, Roseovarius sp. NH52J, strain NH52J
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.