node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ADL52133.1 | rplC | Clocel_2419 | Clocel_3733 | KEGG: scl:sce4122 hypothetical protein. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.614 |
ADL52133.1 | rplO | Clocel_2419 | Clocel_3714 | KEGG: scl:sce4122 hypothetical protein. | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.651 |
ADL52133.1 | rplP | Clocel_2419 | Clocel_3726 | KEGG: scl:sce4122 hypothetical protein. | Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.611 |
ADL52133.1 | rplT | Clocel_2419 | Clocel_2008 | KEGG: scl:sce4122 hypothetical protein. | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.602 |
ADL52133.1 | rpmB | Clocel_2419 | Clocel_1882 | KEGG: scl:sce4122 hypothetical protein. | KEGG: cpr:CPR_1705 50S ribosomal protein L28; TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.602 |
ADL52133.1 | rpsE | Clocel_2419 | Clocel_3716 | KEGG: scl:sce4122 hypothetical protein. | Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.627 |
ADL52133.1 | rpsL | Clocel_2419 | Clocel_3738 | KEGG: scl:sce4122 hypothetical protein. | Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.695 |
ADL52133.1 | rpsQ | Clocel_2419 | Clocel_3724 | KEGG: scl:sce4122 hypothetical protein. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.646 |
ADL52133.1 | rpsT | Clocel_2419 | Clocel_1409 | KEGG: scl:sce4122 hypothetical protein. | Ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.620 |
ADL52133.1 | rpsU | Clocel_2419 | Clocel_1443 | KEGG: scl:sce4122 hypothetical protein. | KEGG: cac:CAC1288 30S ribosomal protein S21; TIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. | 0.621 |
rplC | ADL52133.1 | Clocel_3733 | Clocel_2419 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | KEGG: scl:sce4122 hypothetical protein. | 0.614 |
rplC | rplO | Clocel_3733 | Clocel_3714 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.999 |
rplC | rplP | Clocel_3733 | Clocel_3726 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.999 |
rplC | rplT | Clocel_3733 | Clocel_2008 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.987 |
rplC | rpmB | Clocel_3733 | Clocel_1882 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | KEGG: cpr:CPR_1705 50S ribosomal protein L28; TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.976 |
rplC | rpsE | Clocel_3733 | Clocel_3716 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.995 |
rplC | rpsL | Clocel_3733 | Clocel_3738 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.989 |
rplC | rpsQ | Clocel_3733 | Clocel_3724 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.994 |
rplC | rpsT | Clocel_3733 | Clocel_1409 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.938 |
rplC | rpsU | Clocel_3733 | Clocel_1443 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | KEGG: cac:CAC1288 30S ribosomal protein S21; TIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. | 0.895 |