STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACV23852.1KEGG: afw:Anae109_0787 beta-lactamase domain-containing protein. (266 aa)    
Predicted Functional Partners:
ACV23853.1
Hypothetical protein.
       0.723
ACV24252.1
PFAM: protein of unknown function DUF890; methyltransferase small; KEGG: similar to conserved hypothetical protein.
  
  
 0.659
uppS
Undecaprenyl diphosphate synthase; Catalyzes the sequential condensation of isopentenyl diphosphate (IPP) with geranylgeranyl diphosphate (GGPP) to yield (2Z,6Z,10Z,14Z,18Z,22Z,26Z,30E,34E,38E)-undecaprenyl diphosphate (tritrans,heptacis-UPP). It is probably the precursor of glycosyl carrier lipids.
  
    0.629
ACV23856.1
TIGRFAM: methanogen marker protein 4.
 
     0.620
ACV24515.1
TIGRFAM: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerization domain protein; KEGG: dma:DMR_26040 peptidase M20 family protein.
       0.609
rnz
Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family.
     
 0.567
ACV24466.1
PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dvl:Dvul_1155 response regulator receiver protein.
  
  
 0.551
ACV24612.1
PFAM: Uncharacterized conserved protein UCP019262.
       0.546
ACV23858.1
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pca:Pcar_2086 ABC-type sulfate transport system, permease component.
 
     0.473
ACV25191.1
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dat:HRM2_15240 BioB2.
 
   
 0.451
Your Current Organism:
Methanocaldococcus fervens
NCBI taxonomy Id: 573064
Other names: M. fervens AG86, Methanocaldococcus fervens AG86, Methanocaldococcus fervens DSM 4213, Methanocaldococcus fervens str. AG86, Methanocaldococcus fervens strain AG86
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