Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
ACV23950.1Transcriptional regulator protein-like protein; KEGG: hypothetical protein. (162 aa)    
Predicted Functional Partners:
ACV23918.1
PFAM: Protein of unknown function UPF0113.
       0.609
ACV23952.1
PFAM: Carbamoyltransferase; KEGG: pub:SAR11_0554 carbamoyltransferase.
       0.590
ACV23951.1
PFAM: protein of unknown function DUF77; KEGG: sfu:Sfum_0022 protein of unknown function DUF77.
       0.584
ACV23977.1
PFAM: Circadian clock protein KaiC central region; KaiA binding; KEGG: bbt:BBta_6554 circadian clock protein KaiC; Belongs to the UPF0273 family.
     
 0.476
ACV23949.1
PFAM: Pre-mRNA processing ribonucleoprotein, binding domain protein; NOSIC domain protein; KEGG: SnoRNA binding domain containing protein.
       0.466
Your Current Organism:
Methanocaldococcus fervens
NCBI taxonomy Id: 573064
Other names: M. fervens AG86, Methanocaldococcus fervens AG86, Methanocaldococcus fervens DSM 4213, Methanocaldococcus fervens str. AG86, Methanocaldococcus fervens strain AG86
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