Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACV24004.1KEGG: sfu:Sfum_3170 hypothetical protein. (154 aa)    
Predicted Functional Partners:
ACV24008.1
KEGG: dol:Dole_3248 hypothetical protein.
 
    0.993
ACV24475.1
KEGG: pca:Pcar_0820 hypothetical protein.
 
    0.888
ACV24474.1
KEGG: dds:Ddes_0905 hypothetical protein.
 
    0.852
ACV24006.1
PFAM: protein of unknown function DUF369; KEGG: sfu:Sfum_3204 protein of unknown function DUF369.
 
     0.831
ACV24005.1
PFAM: Protein of unknown function DUF2297; KEGG: dps:DP1558 hypothetical protein.
       0.745
ACV24869.1
KEGG: dat:HRM2_41960 hypothetical protein.
  
     0.414
ACV24782.1
TIGRFAM: CRISPR-associated protein, TM1812 family; CRISPR-associated protein DxTHG motif; PFAM: CRISPR-associated protein TM1812; KEGG: net:Neut_2223 CRISPR-associated TM1812 family protein.
  
     0.405
Your Current Organism:
Methanocaldococcus fervens
NCBI taxonomy Id: 573064
Other names: M. fervens AG86, Methanocaldococcus fervens AG86, Methanocaldococcus fervens DSM 4213, Methanocaldococcus fervens str. AG86, Methanocaldococcus fervens strain AG86
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