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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACV24086.1PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: nis:NIS_1258 hypothetical protein. (228 aa)    
Predicted Functional Partners:
ACV24085.1
PFAM: prephenate dehydratase; amino acid-binding ACT domain protein; KEGG: nmu:Nmul_A2192 chorismate mutase.
       0.979
ACV24323.1
Hypothetical protein; KEGG: cjj:CJJ81176_1143 general glycosylation pathway protein.
  
    0.972
ACV24087.1
Hypothetical protein.
       0.906
rps5
Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy.
    
 0.765
rps24e
PFAM: Ribosomal protein S24e; KEGG: ribosomal protein S24e; Belongs to the eukaryotic ribosomal protein eS24 family.
  
 0.747
rps6e
PFAM: Ribosomal protein S6e; KEGG: 40S ribosomal protein S6; K02991 small subunit ribosomal protein S6e; Belongs to the eukaryotic ribosomal protein eS6 family.
  
 0.734
rps3ae
PFAM: ribosomal protein S3Ae; KEGG: hypothetical protein; Belongs to the eukaryotic ribosomal protein eS1 family.
  
  0.733
rps12
Ribosomal protein S23 (S12); With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family.
  
 0.731
rps15
PFAM: Ribosomal S13S15 domain protein; ribosomal protein S15; KEGG: similar to ribosomal protein S13; K02953 small subunit ribosomal protein S13e.
  
 0.730
rps4e
PFAM: Ribosomal protein S4E, central domain protein; Ribosomal protein S4E domain protein; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; KEGG: Hypothetical protein CBG05762; K02987 small subunit ribosomal protein S4e; Belongs to the eukaryotic ribosomal protein eS4 family.
   
  0.726
Your Current Organism:
Methanocaldococcus fervens
NCBI taxonomy Id: 573064
Other names: M. fervens AG86, Methanocaldococcus fervens AG86, Methanocaldococcus fervens DSM 4213, Methanocaldococcus fervens str. AG86, Methanocaldococcus fervens strain AG86
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