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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACV24129.1PFAM: TatD-related deoxyribonuclease. (280 aa)    
Predicted Functional Partners:
rpl40e
Hypothetical protein; Belongs to the eukaryotic ribosomal protein eL40 family.
 
     0.734
ACV24106.1
PFAM: NMD3 family protein.
 
     0.678
ACV24451.1
PFAM: PUA domain containing protein; SMART: PUA domain containing protein.
  
     0.676
ACV24614.1
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: ftf:FTF0287c hypothetical protein.
  
     0.572
ACV25284.1
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
  
     0.567
ACV25131.1
PFAM: Protein of unknown function UPF0179; Belongs to the UPF0179 family.
  
     0.565
hflX
GTP-binding proten HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.
       0.545
ACV24282.1
PFAM: Protein of unknown function DUF531.
  
     0.497
ACV24432.1
TRNA methyltransferase; KEGG: ATCHX11 (cation/H+ exchanger 11); monovalent cation:proton antiporter.
  
     0.494
cmk
TIGRFAM: cytidylate kinase; KEGG: gme:Gmet_1979 transport-associated protein.
 
     0.487
Your Current Organism:
Methanocaldococcus fervens
NCBI taxonomy Id: 573064
Other names: M. fervens AG86, Methanocaldococcus fervens AG86, Methanocaldococcus fervens DSM 4213, Methanocaldococcus fervens str. AG86, Methanocaldococcus fervens strain AG86
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