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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACV24154.1Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein. (212 aa)    
Predicted Functional Partners:
ACV24157.1
PFAM: Protein of unknown function DUF2109, membrane.
  
  
 0.987
ACV24158.1
PFAM: Protein of unknown function DUF2108, membrane.
  
  
 0.987
ACV24155.1
Membrane protein-like protein.
  
  
 0.985
ACV24156.1
Membrane protein-like protein.
  
    0.983
ACV24159.1
PFAM: [NiFe]-hydrogenase-3-type complex Eha, membrane protein EhaE.
  
    0.979
ACV24160.1
PFAM: [NiFe]-hydrogenase-3-type complex Eha, membrane protein EhaF.
  
    0.978
ACV24161.1
PFAM: Protein of unknown function DUF2105, membrane.
  
    0.974
ACV24162.1
PFAM: [NiFe]-hydrogenase-3-type complex Eha, membrane protein EhaH, predicted; KEGG: vcj:VCD_000092 Na(+) H(+) antiporter subunit D.
  
    0.918
ACV24163.1
Hypothetical protein.
  
    0.862
ACV24164.1
PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: nam:NAMH_1061 carbon monoxide-induced hydrogenase, CooK subunit.
  
    0.778
Your Current Organism:
Methanocaldococcus fervens
NCBI taxonomy Id: 573064
Other names: M. fervens AG86, Methanocaldococcus fervens AG86, Methanocaldococcus fervens DSM 4213, Methanocaldococcus fervens str. AG86, Methanocaldococcus fervens strain AG86
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