Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ACV24316.1PFAM: inner-membrane translocator; KEGG: csa:Csal_1419 inner-membrane translocator. (345 aa)    
Predicted Functional Partners:
ACV24317.1
PFAM: inner-membrane translocator; KEGG: bxe:Bxe_A2753 branched chain amino acid ABC transporter inner membrane protein.
 
 
 0.999
ACV24318.1
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pub:SAR11_1352 ATP-binding protein of ABC transporter.
 
 
 0.999
tmk
KEGG: wpi:WPa_0905 thymidylate kinase; TIGRFAM: thymidylate kinase; PFAM: thymidylate kinase.
 
     0.436
ACV25286.1
PFAM: Thiolase; KEGG: gur:Gura_4354 thiolase.
 
  
 0.421
rps13
Ribosomal protein S13P; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement; Belongs to the universal ribosomal protein uS13 family.
       0.405
Your Current Organism:
Methanocaldococcus fervens
NCBI taxonomy Id: 573064
Other names: M. fervens AG86, Methanocaldococcus fervens AG86, Methanocaldococcus fervens DSM 4213, Methanocaldococcus fervens str. AG86, Methanocaldococcus fervens strain AG86
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