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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ACV24513.1PFAM: Protein of unknown function DUF1610. (54 aa)    
Predicted Functional Partners:
rps3
Ribosomal protein S3; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.
 
   0.995
rpl22
Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.
  
   0.995
rpl29
TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; KEGG: 60S ribosomal protein L35; K02918 large subunit ribosomal protein L35e; Belongs to the universal ribosomal protein uL29 family.
  
   0.994
ef1b
Translation elongation factor aEF-1 beta; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA.
  
  
 0.991
rps17e
KEGG: 40S ribosomal protein S17-A; K02962 small subunit ribosomal protein S17e; Belongs to the eukaryotic ribosomal protein eS17 family.
 
   0.989
rps27e
PFAM: Ribosomal protein S27E; KEGG: YALI0E34826p.
  
   0.988
rpl40e
Hypothetical protein; Belongs to the eukaryotic ribosomal protein eL40 family.
  
   0.986
rpl39e
PFAM: Ribosomal protein L39e; KEGG: 60S ribosomal protein L39; K02924 large subunit ribosomal protein L39e; Belongs to the eukaryotic ribosomal protein eL39 family.
  
   0.985
rps27ae
PFAM: Ribosomal protein S27a; KEGG: ubiquitin; Belongs to the eukaryotic ribosomal protein eS31 family.
   
   0.981
rpl15e
PFAM: Ribosomal protein L15e; KEGG: 60S ribosomal protein L15 (RPL15B); K02877 large subunit ribosomal protein L15e; Belongs to the eukaryotic ribosomal protein eL15 family.
   
   0.981
Your Current Organism:
Methanocaldococcus fervens
NCBI taxonomy Id: 573064
Other names: M. fervens AG86, Methanocaldococcus fervens AG86, Methanocaldococcus fervens DSM 4213, Methanocaldococcus fervens str. AG86, Methanocaldococcus fervens strain AG86
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