Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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[Homology]
Score
ACV24565.1PFAM: MscS Mechanosensitive ion channel; KEGG: nam:NAMH_1702 mechanosensitive ion channel. (349 aa)    
Predicted Functional Partners:
ACV24106.1
PFAM: NMD3 family protein.
   
    0.620
lig
DNA ligase I, ATP-dependent Dnl1; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair.
       0.615
ACV24563.1
PFAM: MscS Mechanosensitive ion channel; KEGG: nam:NAMH_1702 mechanosensitive ion channel.
 
    
0.463
ACV23897.1
PFAM: Na+/H+ antiporter MnhB subunit-related protein; KEGG: gbm:Gbem_1675 Na+/H+ antiporter MnhB subunit-related protein.
     
 0.443
Your Current Organism:
Methanocaldococcus fervens
NCBI taxonomy Id: 573064
Other names: M. fervens AG86, Methanocaldococcus fervens AG86, Methanocaldococcus fervens DSM 4213, Methanocaldococcus fervens str. AG86, Methanocaldococcus fervens strain AG86
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