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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
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Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ACV24572.1PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gur:Gura_1052 radical SAM domain-containing protein. (603 aa)    
Predicted Functional Partners:
ACV24573.1
KEGG: dal:Dalk_4475 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region.
       0.755
ACV25269.1
PFAM: beta-lactamase domain protein; KEGG: sfu:Sfum_1958 beta-lactamase domain protein.
  
    0.612
ACV24575.1
TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: gur:Gura_2510 TatD family hydrolase.
       0.607
ACV24687.1
PFAM: 4-vinyl reductase 4VR; Roadblock/LC7 family protein; KEGG: dat:HRM2_39440 hypothetical protein.
  
  
 0.559
ACV24876.1
PFAM: 4-vinyl reductase 4VR; KEGG: ppd:Ppro_0428 4-vinyl reductase, 4VR.
  
  
 0.553
ACV24926.1
PFAM: 4-vinyl reductase 4VR.
  
  
 0.553
ACV24571.1
PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: sat:SYN_00432 methyl-accepting chemotaxis protein.
     
 0.525
Your Current Organism:
Methanocaldococcus fervens
NCBI taxonomy Id: 573064
Other names: M. fervens AG86, Methanocaldococcus fervens AG86, Methanocaldococcus fervens DSM 4213, Methanocaldococcus fervens str. AG86, Methanocaldococcus fervens strain AG86
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