Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ACV24711.1PFAM: protein of unknown function DUF114; KEGG: bbt:BBta_7800 hypothetical protein. (278 aa)    
Predicted Functional Partners:
ACV24712.1
PFAM: protein of unknown function DUF192; KEGG: gem:GM21_3209 protein of unknown function DUF192.
       0.981
ACV24713.1
PFAM: peptidase dimerization domain protein; peptidase M20; KEGG: bap:BUAP5A_046 acetylornithine deacetylase.
       0.923
ACV24714.1
PFAM: DNA methylase N-4/N-6 domain protein; KEGG: rpi:Rpic_2136 DNA methylase N-4/N-6 domain protein.
  
    0.792
ACV24710.1
PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: hypothetical protein.
       0.696
Your Current Organism:
Methanocaldococcus fervens
NCBI taxonomy Id: 573064
Other names: M. fervens AG86, Methanocaldococcus fervens AG86, Methanocaldococcus fervens DSM 4213, Methanocaldococcus fervens str. AG86, Methanocaldococcus fervens strain AG86
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