STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACV24719.1PFAM: transcriptional regulator TrmB; KEGG: ecr:ECIAI1_1939 conserved hypothetical protein; CymJ protein, transcriptional regulator domain. (130 aa)    
Predicted Functional Partners:
ACV24720.1
KEGG: cps:CPS_0308 UDP-N-acetylglucosamine 2-epimerase/UDP-N-acetyl-D-mannosamine dehydrogenase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase.
       0.894
rnz
Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family.
  
    0.842
ACV24717.1
TIGRFAM: NADPH-dependent F420 reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: eba:p2A348 oxidoreductase, F420-dependent NADP reductase.
       0.743
ACV24716.1
Type II site-specific deoxyribonuclease.
       0.674
ACV24856.1
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cjr:CJE0873 quinol dehydrogenase membrane component.
 
     0.669
ACV24451.1
PFAM: PUA domain containing protein; SMART: PUA domain containing protein.
 
     0.622
ACV23882.1
Threonine synthase; Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine.
       0.591
ACV24371.1
PFAM: Protein of unknown function DUF54; KEGG: hypothetical protein; Belongs to the UPF0201 family.
  
     0.553
ACV25059.1
PFAM: Radical SAM domain protein; KEGG: pca:Pcar_1369 hypothetical protein.
  
     0.510
ACV24106.1
PFAM: NMD3 family protein.
  
    0.478
Your Current Organism:
Methanocaldococcus fervens
NCBI taxonomy Id: 573064
Other names: M. fervens AG86, Methanocaldococcus fervens AG86, Methanocaldococcus fervens DSM 4213, Methanocaldococcus fervens str. AG86, Methanocaldococcus fervens strain AG86
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