STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACV24746.1PFAM: cysteine-rich small domain. (119 aa)    
Predicted Functional Partners:
ACV24745.1
PFAM: Peptidase A24A domain protein; peptidase A24A prepilin type IV; KEGG: hypothetical protein.
       0.981
ACV24742.1
Hypothetical protein.
     
 0.929
ACV24744.1
PFAM: Protein of unknown function DUF361.
     
 0.812
ACV24741.1
PFAM: Protein of unknown function DUF361.
     
 0.790
cobQ
Cobyric acid synthase CobQ; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
      0.778
ACV24743.1
PFAM: Protein of unknown function DUF515; KEGG: IMH1; potential GRIP domain protein similar to S. cerevisiae IMH1 (YLR309C); possible Golgi localization and role in protein transport under stress conditions.
     
 0.774
ACV25123.1
Conserved hypothetical protein.
  
     0.741
ACV24532.1
TIGRFAM: methanogenesis marker protein 6; PFAM: conserved hypothetical protein.
  
     0.738
ACV24753.1
TIGRFAM: methyl-coenzyme M reductase operon protein D; PFAM: Methyl-coenzyme M reductase, protein D.
  
     0.727
ACV24754.1
TIGRFAM: methyl-coenzyme M reductase I operon protein C; PFAM: Methyl-coenzyme M reductase protein C.
  
     0.725
Your Current Organism:
Methanocaldococcus fervens
NCBI taxonomy Id: 573064
Other names: M. fervens AG86, Methanocaldococcus fervens AG86, Methanocaldococcus fervens DSM 4213, Methanocaldococcus fervens str. AG86, Methanocaldococcus fervens strain AG86
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