Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ACV24780.1PFAM: protein of unknown function DUF711; KEGG: ppd:Ppro_0613 hypothetical protein; Belongs to the UPF0210 family. (458 aa)    
Predicted Functional Partners:
ACV25294.1
PFAM: amino acid-binding ACT domain protein; KEGG: ppd:Ppro_0612 hypothetical protein; Belongs to the UPF0237 family.
 
     0.898
ACV24781.1
KEGG: hypothetical protein.
  
    0.726
ACV24782.1
TIGRFAM: CRISPR-associated protein, TM1812 family; CRISPR-associated protein DxTHG motif; PFAM: CRISPR-associated protein TM1812; KEGG: net:Neut_2223 CRISPR-associated TM1812 family protein.
  
    0.605
gatB
glutamyl-tRNA(Gln) amidotransferase, B subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.
  
    0.521
ACV24784.1
TIGRFAM: CRISPR-associated protein, MJ1666 family; CRISPR-associated protein DxTHG motif; PFAM: CRISPR-associated protein DxTHG; KEGG: p235 rhoptry protein E5.
  
    0.468
ACV24785.1
TIGRFAM: CRISPR-associated RAMP protein, Csm5 family; PFAM: protein of unknown function DUF324; KEGG: dol:Dole_0740 CRISPR-associated RAMP Csm5 family protein.
       0.444
ACV24786.1
TIGRFAM: CRISPR-associated RAMP protein, Csm4 family; PFAM: protein of unknown function DUF324; KEGG: hypothetical protein.
       0.444
ACV24783.1
Hypothetical protein.
       0.442
ACV24787.1
TIGRFAM: CRISPR-associated RAMP protein, Csm3 family; PFAM: protein of unknown function DUF324; KEGG: neu:NE0121 hypothetical protein.
       0.401
Your Current Organism:
Methanocaldococcus fervens
NCBI taxonomy Id: 573064
Other names: M. fervens AG86, Methanocaldococcus fervens AG86, Methanocaldococcus fervens DSM 4213, Methanocaldococcus fervens str. AG86, Methanocaldococcus fervens strain AG86
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