STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACV24819.1PFAM: AIR synthase related protein domain protein; AIR synthase related protein; KEGG: bxe:Bxe_A1411 putative thiamine-monophosphate kinase. (294 aa)    
Predicted Functional Partners:
ACV24821.1
TIGRFAM: methanogenesis marker protein 17; PFAM: Uncharacterized conserved protein UCP019464, methanogenesis.
 
     0.585
ACV24820.1
TIGRFAM: methanogenesis marker protein 15; CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: sfu:Sfum_1829 putative CoA-substrate-specific enzyme activase.
       0.573
argH
TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: gur:Gura_0231 argininosuccinate lyase.
       0.542
ACV24823.1
PFAM: protein of unknown function DUF366; KEGG: bba:Bd2230 hypothetical protein.
       0.501
ACV24822.1
PFAM: Radical SAM domain protein; KEGG: lpf:lpl0804 hypothetical protein.
       0.465
ACV24824.1
PFAM: permease; KEGG: nis:NIS_0906 hypothetical protein.
       0.459
ACV24854.1
PFAM: DsrE family protein; SirA family protein; KEGG: pca:Pcar_0429 uncharacterized NAD(FAD)-dependent dehydrogenase.
 
   
 0.428
ACV24844.1
PFAM: Type II secretion system F domain; KEGG: pag:PLES_46811 TadB.
  
     0.423
serS
seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec); Belongs to the class-II aminoacyl-tRNA synthetase family. Type-2 seryl-tRNA synthetase subfamily.
 
   
 0.403
Your Current Organism:
Methanocaldococcus fervens
NCBI taxonomy Id: 573064
Other names: M. fervens AG86, Methanocaldococcus fervens AG86, Methanocaldococcus fervens DSM 4213, Methanocaldococcus fervens str. AG86, Methanocaldococcus fervens strain AG86
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