STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACV24842.1PFAM: type II secretion system protein E; SMART: Hedgehog/intein hint domain protein; KEGG: aeh:Mlg_2160 type II secretion system protein E. (685 aa)    
Predicted Functional Partners:
ACV24843.1
PFAM: Type II secretion system F domain; KEGG: rle:pRL110574 putative transmembrane pilus component protein.
  
  
 0.940
ACV24844.1
PFAM: Type II secretion system F domain; KEGG: pag:PLES_46811 TadB.
  
  
 0.936
tfb
Transcription factor TFIIB cyclin-related; Stabilizes TBP binding to an archaeal box-A promoter. Also responsible for recruiting RNA polymerase II to the pre-initiation complex (DNA-TBP-TFIIB).
  
  
 0.765
ACV23931.1
PFAM: Type II secretion system F domain.
 
  
 0.686
ACV24840.1
Hypothetical protein.
  
    0.614
ACV25014.1
PFAM: Type II secretion system F domain.
 
  
 0.568
ACV25016.1
Flagella biogenesis ATPase-like protein; KEGG: bba:Bd2712 DNA repair protein RadA.
 
  
 0.533
ACV24743.1
PFAM: Protein of unknown function DUF515; KEGG: IMH1; potential GRIP domain protein similar to S. cerevisiae IMH1 (YLR309C); possible Golgi localization and role in protein transport under stress conditions.
     
 0.443
ACV25017.1
PFAM: flagellin.
  
  
 0.429
ACV25021.1
PFAM: Flagella accessory C family protein; KEGG: Viral A-type inclusion protein repeat containing protein.
  
  
 0.410
Your Current Organism:
Methanocaldococcus fervens
NCBI taxonomy Id: 573064
Other names: M. fervens AG86, Methanocaldococcus fervens AG86, Methanocaldococcus fervens DSM 4213, Methanocaldococcus fervens str. AG86, Methanocaldococcus fervens strain AG86
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.