Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ACV24871.1PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: nmc:NMC0980 rubredoxin. (46 aa)    
Predicted Functional Partners:
ACV24870.1
PFAM: Hypothetical protein MTH865.
  
    0.985
ACV24872.1
PFAM: Carboxymuconolactone decarboxylase; KEGG: bpd:BURPS668_0604 4-carboxymuconolactone decarboxylase family protein.
  
  
 0.874
ACV24869.1
KEGG: dat:HRM2_41960 hypothetical protein.
       0.863
ACV24868.1
Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides.
  
  
 0.860
ACV24867.1
PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: pca:Pcar_2346 rubrerythrin.
  
  
 0.822
ACV24464.1
UbiA prenyltransferase; Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.
     
 0.702
ACV24879.1
PFAM: Rubrerythrin; KEGG: dps:DP1656 hypothetical protein.
  
  
 0.646
ACV24585.1
TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: Ferrous iron transport protein B domain protein; GTP-binding protein HSR1-related; nucleoside recognition domain protein; Ferrous iron transport B domain protein; KEGG: gem:GM21_3765 ferrous iron transport protein B.
     
 0.645
ACV24866.1
KEGG: dde:Dde_1794 hypothetical protein.
  
    0.645
gap
Glyceraldehyde-3-phosphate dehydrogenase, type II; KEGG: ajs:Ajs_2165 glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type II; PFAM: glyceraldehyde 3-phosphate dehydrogenase.
  
  
 0.584
Your Current Organism:
Methanocaldococcus fervens
NCBI taxonomy Id: 573064
Other names: M. fervens AG86, Methanocaldococcus fervens AG86, Methanocaldococcus fervens DSM 4213, Methanocaldococcus fervens str. AG86, Methanocaldococcus fervens strain AG86
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