Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ACV24943.1PFAM: transcriptional regulator TrmB. (116 aa)    
Predicted Functional Partners:
ACV24371.1
PFAM: Protein of unknown function DUF54; KEGG: hypothetical protein; Belongs to the UPF0201 family.
  
     0.586
ACV24451.1
PFAM: PUA domain containing protein; SMART: PUA domain containing protein.
 
     0.544
ACV24942.1
PFAM: nitrite and sulphite reductase 4Fe-4S region; 4Fe-4S ferredoxin iron-sulfur binding domain protein; coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; KEGG: gsu:GSU1351 iron-sulfur cluster-binding protein.
       0.503
ACV24151.1
PFAM: amino acid-binding ACT domain protein; KEGG: ank:AnaeK_3529 threonine dehydratase.
  
     0.487
ACV25059.1
PFAM: Radical SAM domain protein; KEGG: pca:Pcar_1369 hypothetical protein.
  
     0.484
ACV24241.1
PFAM: Protein of unknown function DUF555; Belongs to the UPF0212 family.
  
     0.480
ACV24292.1
PFAM: Protein of unknown function DUF54.
  
     0.466
ACV24391.1
PFAM: RNA polymerase Rpb4.
  
     0.432
rps24e
PFAM: Ribosomal protein S24e; KEGG: ribosomal protein S24e; Belongs to the eukaryotic ribosomal protein eS24 family.
  
     0.428
ACV24112.1
PFAM: protein of unknown function DUF75.
  
     0.421
Your Current Organism:
Methanocaldococcus fervens
NCBI taxonomy Id: 573064
Other names: M. fervens AG86, Methanocaldococcus fervens AG86, Methanocaldococcus fervens DSM 4213, Methanocaldococcus fervens str. AG86, Methanocaldococcus fervens strain AG86
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