Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ACV25010.1PFAM: Methyltransferase type 12; Methyltransferase type 11; KEGG: dat:HRM2_44560 UbiE6. (364 aa)    
Predicted Functional Partners:
ACV25011.1
PFAM: Protein of unknown function DUF1495.
  
  
 0.997
ACV25012.1
KEGG: rhoptry protein.
     
 0.983
ACV25014.1
PFAM: Type II secretion system F domain.
 
   
 0.833
ACV25016.1
Flagella biogenesis ATPase-like protein; KEGG: bba:Bd2712 DNA repair protein RadA.
 
     0.795
ACV25013.1
PFAM: Peptidase A24B, FlaK domain protein; peptidase A24A prepilin type IV; KEGG: shl:Shal_2284 peptidase A24A prepilin type IV.
 
     0.725
rps5
Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy.
    
 0.722
ACV25023.1
Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of archaeal flagella.
 
   
 0.700
ACV25022.1
Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of archaeal flagella.
 
   
 0.697
ACV25024.1
Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of archaeal flagella.
 
   
 0.687
ACV24849.1
Transcriptional regulator, MarR family; PFAM: regulatory protein ArsR; regulatory protein MarR; SMART: regulatory protein ArsR; KEGG: ank:AnaeK_0686 general secretion pathway protein-related protein.
 
     0.670
Your Current Organism:
Methanocaldococcus fervens
NCBI taxonomy Id: 573064
Other names: M. fervens AG86, Methanocaldococcus fervens AG86, Methanocaldococcus fervens DSM 4213, Methanocaldococcus fervens str. AG86, Methanocaldococcus fervens strain AG86
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