STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACV25115.1PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dal:Dalk_1379 binding-protein-dependent transport systems inner membrane component. (256 aa)    
Predicted Functional Partners:
ACV23988.1
KEGG: dal:Dalk_1380 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic components.
 
 0.999
ACV25116.1
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gur:Gura_3876 ABC transporter related.
 
 0.999
ACV24428.1
PFAM: nitrogen regulatory protein P-II; KEGG: abu:Abu_0198 nitrogen regulatory protein PII; Belongs to the P(II) protein family.
   
 
 0.651
mer
5,10-methylenetetrahydromethanopterin reductase; Catalyzes the reversible reduction of methylene-H(4)MPT to methyl-H(4)MPT; Belongs to the mer family.
  
  
 0.632
ACV24046.1
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein.
       0.594
ACV25114.1
PFAM: ATP dependent DNA ligase; KEGG: noc:Noc_1413 ATP-dependent DNA ligase.
       0.541
Your Current Organism:
Methanocaldococcus fervens
NCBI taxonomy Id: 573064
Other names: M. fervens AG86, Methanocaldococcus fervens AG86, Methanocaldococcus fervens DSM 4213, Methanocaldococcus fervens str. AG86, Methanocaldococcus fervens strain AG86
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