Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ACV25275.1PFAM: methyltransferase small; putative RNA methylase; KEGG: vok:COSY_0362 hypothetical protein. (196 aa)    
Predicted Functional Partners:
rpl34e
PFAM: Ribosomal protein L34e; KEGG: similar to putative ribosomal protein L34; K02915 large subunit ribosomal protein L34e; Belongs to the eukaryotic ribosomal protein eL34 family.
  
 0.979
rpl40e
Hypothetical protein; Belongs to the eukaryotic ribosomal protein eL40 family.
  
 0.977
rpl14e
KEGG: hypothetical protein; K02875 large subunit ribosomal protein L14e; Belongs to the eukaryotic ribosomal protein eL14 family.
  
 0.975
rps11
Ribosomal protein S11P; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family.
  
 
 0.974
rpl30e
PFAM: ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: RPL30; ribosomal protein L30; K02908 large subunit ribosomal protein L30e; Belongs to the eukaryotic ribosomal protein eL30 family.
  
 0.969
rpl31e
PFAM: Ribosomal protein L31e; KEGG: similar to ribosomal protein L31; K02910 large subunit ribosomal protein L31e.
   
 0.968
rpl18e
PFAM: ribosomal protein L15; KEGG: 60S ribosomal protein L18; K02883 large subunit ribosomal protein L18e; Belongs to the eukaryotic ribosomal protein eL18 family.
  
 0.968
rpl24
Ribosomal protein L24; Located at the polypeptide exit tunnel on the outside of the subunit.
  
 0.968
rpl21e
PFAM: Ribosomal protein L21e; KEGG: 60S ribosomal protein L21; K02889 large subunit ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family.
  
 0.967
rpl24e
Ribosomal protein L24E; Binds to the 23S rRNA.
  
 0.965
Your Current Organism:
Methanocaldococcus fervens
NCBI taxonomy Id: 573064
Other names: M. fervens AG86, Methanocaldococcus fervens AG86, Methanocaldococcus fervens DSM 4213, Methanocaldococcus fervens str. AG86, Methanocaldococcus fervens strain AG86
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