STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU11822.1PFAM: protein of unknown function DUF1239; KEGG: pzu:PHZ_c0172 hypothetical protein. (218 aa)    
Predicted Functional Partners:
ADU11820.1
KEGG: cak:Caul_4957 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
    
  0.974
ADU11821.1
KEGG: cak:Caul_4956 OstA family protein; TIGRFAM: lipopolysaccharide transport periplasmic protein LptA; PFAM: OstA family protein.
     
 0.766
ADU11823.1
KEGG: 3'-5' exonuclease; PFAM: 3'-5' exonuclease; SMART: 3'-5' exonuclease.
       0.717
ADU15097.1
PFAM: Protein of unknown function DUF3035; KEGG: pzu:PHZ_c3163 hypothetical protein.
  
     0.669
ADU14646.1
PFAM: Protein of unknown function DUF2155; KEGG: hypothetical protein.
  
     0.629
ADU11819.1
RNA polymerase, sigma 54 subunit, RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
       0.566
ADU13179.1
PFAM: O-antigen polymerase; KEGG: cak:Caul_3543 O-antigen polymerase.
  
     0.560
ADU14342.1
PFAM: Colicin V production protein; KEGG: pzu:PHZ_c1540 hypothetical protein.
  
     0.535
ADU14898.1
PFAM: protein of unknown function DUF218; KEGG: cak:Caul_3219 hypothetical protein.
  
     0.510
ADU13196.1
PFAM: Protein of unknown function DUF2336; KEGG: pzu:PHZ_c1177 hypothetical protein.
  
     0.497
Your Current Organism:
Asticcacaulis excentricus
NCBI taxonomy Id: 573065
Other names: A. excentricus CB 48, Asticcacaulis excentricus ATCC 15261, Asticcacaulis excentricus CB 48, Asticcacaulis excentricus DSM 4724, Asticcacaulis excentricus str. CB 48, Asticcacaulis excentricus strain CB 48
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