STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU11824.1KEGG: cak:Caul_0047 general substrate transporter. (560 aa)    
Predicted Functional Partners:
rpmE
Ribosomal protein L31; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.
   
    0.671
rpmJ
KEGG: cak:Caul_0873 50S ribosomal protein L36; TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.
   
    0.621
ADU14577.1
TIGRFAM: riboflavin synthase, alpha subunit; KEGG: pzu:PHZ_c1670 riboflavin synthase subunit alpha; PFAM: Lumazine-binding protein.
   
    0.566
ADU11823.1
KEGG: 3'-5' exonuclease; PFAM: 3'-5' exonuclease; SMART: 3'-5' exonuclease.
       0.497
ADU11822.1
PFAM: protein of unknown function DUF1239; KEGG: pzu:PHZ_c0172 hypothetical protein.
       0.441
ADU11825.1
KEGG: ccs:CCNA_03821 exodeoxyribonuclease III; TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase.
       0.438
ADU11826.1
KEGG: atu:Atu3005 hypothetical protein.
       0.436
ADU11820.1
KEGG: cak:Caul_4957 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.408
ADU11821.1
KEGG: cak:Caul_4956 OstA family protein; TIGRFAM: lipopolysaccharide transport periplasmic protein LptA; PFAM: OstA family protein.
       0.408
Your Current Organism:
Asticcacaulis excentricus
NCBI taxonomy Id: 573065
Other names: A. excentricus CB 48, Asticcacaulis excentricus ATCC 15261, Asticcacaulis excentricus CB 48, Asticcacaulis excentricus DSM 4724, Asticcacaulis excentricus str. CB 48, Asticcacaulis excentricus strain CB 48
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