STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU11834.1PFAM: Protein of unknown function DUF3576; KEGG: cak:Caul_5031 hypothetical protein. (164 aa)    
Predicted Functional Partners:
ADU11836.1
PFAM: Protein of unknown function DUF2159, secreted; KEGG: hypothetical protein.
 
     0.782
ADU14570.1
PFAM: SmpA/OmlA domain-containing protein; KEGG: pzu:PHZ_p0250 small protein A (tmRNA-binding).
  
     0.771
ADU15097.1
PFAM: Protein of unknown function DUF3035; KEGG: pzu:PHZ_c3163 hypothetical protein.
  
     0.771
ADU14336.1
SMART: Pyrrolo-quinoline quinone beta-propeller repeat; KEGG: cak:Caul_2497 pyrrolo-quinoline quinone.
  
    0.755
ADU14193.1
TIGRFAM: rpsU-divergently transcribed protein; KEGG: pzu:PHZ_c3285 hypothetical protein.
  
     0.745
ADU14667.1
PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: pzu:PHZ_c1708 peptidyl-prolyl cis-trans isomerase family protein.
  
   
 0.722
ADU11837.1
KEGG: pzu:PHZ_c3519 DNA polymerase III subunit delta; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta.
 
     0.721
ADU13297.1
TIGRFAM: penicillin-binding protein 2; KEGG: pzu:PHZ_c2281 penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain.
  
     0.709
leuS
KEGG: ccs:CCNA_03865 leucyl-tRNA synthetase; TIGRFAM: leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.708
ADU12182.1
SMART: helicase c2; KEGG: pzu:PHZ_c2755 ATP-dependent DNA helicase.
  
     0.696
Your Current Organism:
Asticcacaulis excentricus
NCBI taxonomy Id: 573065
Other names: A. excentricus CB 48, Asticcacaulis excentricus ATCC 15261, Asticcacaulis excentricus CB 48, Asticcacaulis excentricus DSM 4724, Asticcacaulis excentricus str. CB 48, Asticcacaulis excentricus strain CB 48
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