STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU12018.1PFAM: GcrA cell cycle regulator; KEGG: jan:Jann_1020 GcrA cell cycle regulator. (247 aa)    
Predicted Functional Partners:
ADU12015.1
Hypothetical protein; KEGG: sfu:Sfum_1228 translation initiation factor IF-2.
       0.773
ADU12016.1
Hypothetical protein; KEGG: mag:amb2001 type V secretory pathway, adhesin AidA.
       0.773
ADU12017.1
Hypothetical protein; KEGG: hvo:HVO_0176 cationic amino acid transporter.
       0.773
ADU12019.1
Hypothetical protein; KEGG: cpv:cgd5_3420 TRAP-C2 extracellular protein.
       0.773
ADU12020.1
KEGG: mno:Mnod_6985 hypothetical protein.
       0.706
ADU12021.1
KEGG: xau:Xaut_0770 hypothetical protein.
       0.701
ADU12022.1
TIGRFAM: phage/plasmid primase, P4 family; PFAM: primase P4; KEGG: tmz:Tmz1t_2797 P4 family phage/plasmid primase; SMART: primase P4.
       0.701
rpoD
RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
 
 0.613
rpoH
RNA polymerase, sigma 32 subunit, RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.
    
 
 0.550
ADU11718.1
PFAM: protein of unknown function DUF1674; KEGG: rpe:RPE_0029 hypothetical protein.
  
     0.536
Your Current Organism:
Asticcacaulis excentricus
NCBI taxonomy Id: 573065
Other names: A. excentricus CB 48, Asticcacaulis excentricus ATCC 15261, Asticcacaulis excentricus CB 48, Asticcacaulis excentricus DSM 4724, Asticcacaulis excentricus str. CB 48, Asticcacaulis excentricus strain CB 48
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