STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU12226.1PFAM: HEPN domain protein; DNA polymerase beta domain protein region; KEGG: sjp:SJA_P2-00390 putative nucleotidyltransferase. (308 aa)    
Predicted Functional Partners:
ADU12227.1
PFAM: TRAG family protein; KEGG: ara:Arad_15020 Ti-type conjugative transfer system protein TraG.
       0.773
ADU12228.1
KEGG: ara:Arad_15021 mobilization protein C.
       0.709
ADU13888.1
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sjp:SJA_P1-00920 TonB-dependent receptor-like protein.
  
     0.612
ADU13357.1
PFAM: protein of unknown function DUF490; KEGG: sjp:SJA_C1-32150 hypothetical protein.
  
     0.573
ADU13280.1
KEGG: mag:amb3415 hypothetical protein.
  
     0.551
ADU12225.1
PFAM: beta-lactamase; Peptidase S12, Pab87-related-like; KEGG: sus:Acid_2490 beta-lactamase.
       0.541
ADU14094.1
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sjp:SJA_P1-00920 TonB-dependent receptor-like protein.
  
     0.536
ADU15031.1
PFAM: FAD dependent oxidoreductase; KEGG: smd:Smed_3864 D-amino-acid dehydrogenase.
  
     0.437
ADU13204.1
TonB domain protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
     0.408
Your Current Organism:
Asticcacaulis excentricus
NCBI taxonomy Id: 573065
Other names: A. excentricus CB 48, Asticcacaulis excentricus ATCC 15261, Asticcacaulis excentricus CB 48, Asticcacaulis excentricus DSM 4724, Asticcacaulis excentricus str. CB 48, Asticcacaulis excentricus strain CB 48
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