STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU12804.1PFAM: protein of unknown function DUF805; KEGG: eli:ELI_09010 hypothetical protein. (197 aa)    
Predicted Functional Partners:
ADU12851.1
PFAM: protein of unknown function DUF805; KEGG: sbm:Shew185_0992 hypothetical protein.
  
     0.775
ADU14372.1
PFAM: protein of unknown function DUF805; KEGG: ppr:PBPRA2479 hypothetical protein.
  
     0.775
ADU14377.1
PFAM: protein of unknown function DUF805; KEGG: mlo:mlr4844 hypothetical protein.
  
     0.769
ADU12805.1
PFAM: protein of unknown function DUF805; KEGG: sfr:Sfri_1774 hypothetical protein.
 
    
0.740
rnhB
Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
       0.610
ADU12806.1
KEGG: folate-binding protein YgfZ; TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel.
       0.522
Your Current Organism:
Asticcacaulis excentricus
NCBI taxonomy Id: 573065
Other names: A. excentricus CB 48, Asticcacaulis excentricus ATCC 15261, Asticcacaulis excentricus CB 48, Asticcacaulis excentricus DSM 4724, Asticcacaulis excentricus str. CB 48, Asticcacaulis excentricus strain CB 48
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