STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU12890.1PFAM: TonB-dependent receptor; KEGG: xcv:XCV2510 TonB-dependent outer membrane receptor. (969 aa)    
Predicted Functional Partners:
ADU12891.1
KEGG: sml:Smlt3253 hypothetical protein.
 
     0.860
ADU12892.1
PFAM: coagulation factor 5/8 type domain protein; KEGG: xca:xccb100_1977 protein carrying glycosyl hydrolase motifs.
 
    0.782
ADU14938.1
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cak:Caul_1120 TonB-dependent receptor.
  
     0.737
ADU12885.1
TIGRFAM: conserved hypothetical protein; KEGG: ccs:CCNA_02919 hypothetical protein.
 
     0.678
ADU12889.1
KEGG: xcc:XCC4129 LacI family transcription regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI.
 
     0.637
ADU12887.1
KEGG: ccs:CCNA_02921 membrane-anchored hypothetical protein.
 
     0.597
ADU12886.1
KEGG: xac:XAC0115 hypothetical protein.
 
     0.550
ADU14361.1
KEGG: xal:XALc_2216 putative TonB-dependent outer membrane receptor protein; TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug.
  
     0.538
ADU12888.1
PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold domain protein; histidine kinase A domain protein; KEGG: met:M446_4874 histidine kinase; SMART: ATP-binding region ATPase domain protein; response regulator receiver; PAC repeat-containing protein; PAS domain containing protein; histidine kinase A domain protein.
 
   
 0.518
ADU13611.1
KEGG: xop:PXO_02159 hypothetical protein.
  
     0.518
Your Current Organism:
Asticcacaulis excentricus
NCBI taxonomy Id: 573065
Other names: A. excentricus CB 48, Asticcacaulis excentricus ATCC 15261, Asticcacaulis excentricus CB 48, Asticcacaulis excentricus DSM 4724, Asticcacaulis excentricus str. CB 48, Asticcacaulis excentricus strain CB 48
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