STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU12988.1Pectate lyase; KEGG: dze:Dd1591_1434 pectate lyase; TIGRFAM: pectate lyase; PFAM: Pectic acid lyase. (431 aa)    
Predicted Functional Partners:
ADU13052.1
PFAM: Pectinesterase; KEGG: bja:blr1994 pectinesterase.
   
 0.966
ADU15052.1
PFAM: Pectinesterase; KEGG: hba:Hbal_2622 pectinesterase.
   
 0.908
ADU13053.1
PFAM: lipolytic protein G-D-S-L family; KEGG: xcb:XC_0151 hypothetical protein.
 
     0.867
ADU13636.1
KEGG: cak:Caul_4022 GDSL family lipase.
 
     0.813
ADU13817.1
PFAM: lipolytic protein G-D-S-L family; KEGG: ote:Oter_1336 GDSL family lipase.
 
     0.783
ADU13050.1
KEGG: ote:Oter_4196 hypothetical protein.
  
     0.750
ADU12992.1
Pectate lyase; KEGG: sal:Sala_3040 pectate lyase.
 
     0.692
ADU12293.1
PFAM: glycoside hydrolase family 28; KEGG: glycoside hydrolase family protein.
 
   
 0.652
ADU15053.1
KEGG: hba:Hbal_2621 esterase/lipase-like protein.
 
     0.640
ADU11866.1
PFAM: glycoside hydrolase family 28; KEGG: dfe:Dfer_2300 glycoside hydrolase family 28; Belongs to the glycosyl hydrolase 28 family.
   
 0.624
Your Current Organism:
Asticcacaulis excentricus
NCBI taxonomy Id: 573065
Other names: A. excentricus CB 48, Asticcacaulis excentricus ATCC 15261, Asticcacaulis excentricus CB 48, Asticcacaulis excentricus DSM 4724, Asticcacaulis excentricus str. CB 48, Asticcacaulis excentricus strain CB 48
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