STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU13001.1P-type DNA transfer ATPase VirB11; Part of the Type IV secretion system. Belongs to the GSP E family. (328 aa)    
Predicted Functional Partners:
ADU13005.1
KEGG: eli:ELI_03225 type IV secretion system protein B4, putative; TIGRFAM: type IV secretion/conjugal transfer ATPase, VirB4 family; PFAM: CagE, TrbE, VirB component of type IV transporter system, conserved region.
   
 0.922
ADU13003.1
PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: ccs:CCNA_02503 type IV secretory pathway, VirB9 channel protein.
   
 0.920
ADU13892.1
TIGRFAM: P-type DNA transfer ATPase VirB11; PFAM: type II secretion system protein E; KEGG: bpy:Bphyt_6497 P-type DNA transfer ATPase VirB11; SMART: AAA ATPase.
  
  
 
0.919
ADU13004.1
PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: eli:ELI_03230 hypothetical protein.
 
     0.908
ADU13002.1
PFAM: conjugation TrbI family protein; KEGG: eli:ELI_03240 type IV secretion system protein B10, putative.
   
 0.902
ADU12114.1
PFAM: Type II secretion system F domain; KEGG: ccs:CCNA_03036 TadB-related pilus assembly protein.
 
  
 0.901
ADU12113.1
PFAM: Type II secretion system F domain; KEGG: cak:Caul_4188 type II secretion system protein.
 
  
 0.879
ADU12119.1
TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: cak:Caul_4194 Flp pilus assembly protein CpaB; SMART: SAF domain protein.
 
  
 0.805
ADU13008.1
PFAM: Lytic transglycosylase catalytic; KEGG: hmo:HM1_0762 lytic transglycosylase, catalytic, putative.
  
    0.804
ADU13007.1
PFAM: Conjugal transfer protein TrbC; KEGG: eli:ELI_03215 hypothetical protein.
     
 0.784
Your Current Organism:
Asticcacaulis excentricus
NCBI taxonomy Id: 573065
Other names: A. excentricus CB 48, Asticcacaulis excentricus ATCC 15261, Asticcacaulis excentricus CB 48, Asticcacaulis excentricus DSM 4724, Asticcacaulis excentricus str. CB 48, Asticcacaulis excentricus strain CB 48
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