STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tolBTol-Pal system beta propeller repeat protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. (436 aa)    
Predicted Functional Partners:
pal
Peptidoglycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 0.957
ADU13349.1
PFAM: MotA/TolQ/ExbB proton channel; KEGG: pzu:PHZ_c3089 MotA/TolQ/ExbB proton channel family protein.
 
  
 0.937
ADU13348.1
KEGG: protein TolR; TIGRFAM: protein TolR; PFAM: Biopolymer transport protein ExbD/TolR.
 
  
 0.925
ADU13347.1
TolA protein; KEGG: ccs:CCNA_03339 TolA protein.
  
 
 0.840
ADU12555.1
PFAM: OmpA/MotB domain protein; KEGG: OmpA/MotB domain-containing protein.
 
 
 0.796
ADU13343.1
KEGG: tol-pal system protein YbgF.
  
  
 0.754
bamD
Outer membrane assembly lipoprotein YfiO; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
   
 0.697
ADU13431.1
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: cak:Caul_0198 biopolymer transport protein ExbD/TolR.
 
  
 0.682
ADU14478.1
Lipoprotein releasing system, transmembrane protein, LolC/E family; KEGG: pzu:PHZ_c1784 ABC-type transport system, involved in lipoprotein release, permease component; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214.
  
  
 0.663
bamA
Outer membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
  
 0.657
Your Current Organism:
Asticcacaulis excentricus
NCBI taxonomy Id: 573065
Other names: A. excentricus CB 48, Asticcacaulis excentricus ATCC 15261, Asticcacaulis excentricus CB 48, Asticcacaulis excentricus DSM 4724, Asticcacaulis excentricus str. CB 48, Asticcacaulis excentricus strain CB 48
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