STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU13469.1KEGG: pla:Plav_0951 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2. (184 aa)    
Predicted Functional Partners:
ADU14332.1
KEGG: pzu:PHZ_c1531 RNA polymerase sigma-70 factor, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2.
  
   
 0.776
ADU13467.1
PFAM: EF-Hand, Calmodulin; KEGG: conserved exported protein of unknown function, calcium-binding protein.
       0.773
ADU13468.1
Hypothetical protein; KEGG: reu:Reut_A3217 calcium-binding EF-hand.
       0.773
ADU13470.1
Hypothetical protein; KEGG: mbt:JTY_1883 integral membrane protein.
       0.773
ADU14053.1
RNA polymerase, sigma-24 subunit, ECF subfamily; Manually curated; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; KEGG: ppg:PputGB1_1521 ECF subfamily RNA polymerase sigma-24 factor; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein.
  
     0.742
ADU14045.1
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.609
ADU13471.1
KEGG: ctt:CtCNB1_0614 putative signal transduction protein with.
       0.586
ADU14268.1
PFAM: peptidase M16 domain protein; KEGG: ccs:CCNA_03509 zinc protease.
  
    0.570
ADU13466.1
PFAM: protein of unknown function DUF1078 domain protein; KEGG: hba:Hbal_0413 hypothetical protein.
       0.554
ADU13075.1
TIGRFAM: anti-sigma factor, ChrR family; KEGG: rsk:RSKD131_2491 transcriptional activator ChrR.
 
 
 0.523
Your Current Organism:
Asticcacaulis excentricus
NCBI taxonomy Id: 573065
Other names: A. excentricus CB 48, Asticcacaulis excentricus ATCC 15261, Asticcacaulis excentricus CB 48, Asticcacaulis excentricus DSM 4724, Asticcacaulis excentricus str. CB 48, Asticcacaulis excentricus strain CB 48
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