STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU13562.1KEGG: cak:Caul_1551 L-fucose transporter; TIGRFAM: L-fucose transporter; PFAM: major facilitator superfamily MFS_1. (433 aa)    
Predicted Functional Partners:
ADU13563.1
PFAM: amidohydrolase 2; KEGG: amidohydrolase 2.
 
  
 0.921
ADU13564.1
KEGG: cak:Caul_1548 IclR family transcriptional regulator; PFAM: regulatory protein IclR; SMART: regulatory protein IclR.
  
    0.805
ADU14934.1
PFAM: protein of unknown function DUF718; KEGG: hypothetical protein.
 
  
 0.709
ADU14236.1
PFAM: dihydrodipicolinate synthetase; KEGG: ara:Arad_9101 dihydrodipicolinate synthase; Belongs to the DapA family.
  
  
 0.490
ADU15030.1
PFAM: dihydrodipicolinate synthetase; KEGG: ara:Arad_9101 dihydrodipicolinate synthase.
  
  
 0.490
ADU14366.1
Alpha-1,2-mannosidase; KEGG: xal:XALc_2223 putative alpha-1,2-mannosidase protein; TIGRFAM: alpha-1,2-mannosidase; PFAM: glycosyl hydrolase 92.
 
     0.472
ADU13561.1
PFAM: oxidoreductase domain protein; KEGG: cak:Caul_3971 galactose 1-dehydrogenase.
  
    0.471
ADU13565.1
KEGG: cak:Caul_1547 pyridoxal 4-dehydrogenase; PFAM: aldo/keto reductase.
  
    0.471
ADU13566.1
SAF domain protein; KEGG: cak:Caul_1546 D-galactarate dehydratase/altronate hydrolase-like protein; PFAM: SAF domain protein; SMART: SAF domain protein.
       0.454
ADU13567.1
KEGG: cak:Caul_1545 altronate dehydratase; PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein.
       0.454
Your Current Organism:
Asticcacaulis excentricus
NCBI taxonomy Id: 573065
Other names: A. excentricus CB 48, Asticcacaulis excentricus ATCC 15261, Asticcacaulis excentricus CB 48, Asticcacaulis excentricus DSM 4724, Asticcacaulis excentricus str. CB 48, Asticcacaulis excentricus strain CB 48
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