STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU13674.1SMART: PDZ/DHR/GLGF domain protein; TIGRFAM: protease Do; KEGG: pzu:PHZ_c2689 serine protease HtrA; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; Belongs to the peptidase S1C family. (498 aa)    
Predicted Functional Partners:
ADU12106.1
PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: nar:Saro_2398 peptidase S1 and S6, chymotrypsin/Hap.
  
 
 
0.925
ADU13156.1
PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: svi:Svir_36080 trypsin-like serine protease with C-terminal PDZ domain protein.
     
  0.900
ADU12555.1
PFAM: OmpA/MotB domain protein; KEGG: OmpA/MotB domain-containing protein.
    
 
 0.611
rplY
Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
 
   0.481
ADU13675.1
Cytochrome C biogenesis protein; Possible subunit of a heme lyase.
     
 0.477
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
  
 0.474
ADU13658.1
KEGG: gsu:GSU2314 sensory box histidine kinase/response regulator; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein.
  
  
 0.467
ADU13676.1
PFAM: cytochrome c assembly protein; KEGG: pzu:PHZ_c2691 cytochrome c-type biogenesis protein CycK.
       0.460
ccmE
CcmE/CycJ protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family.
       0.453
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
 
 
  0.444
Your Current Organism:
Asticcacaulis excentricus
NCBI taxonomy Id: 573065
Other names: A. excentricus CB 48, Asticcacaulis excentricus ATCC 15261, Asticcacaulis excentricus CB 48, Asticcacaulis excentricus DSM 4724, Asticcacaulis excentricus str. CB 48, Asticcacaulis excentricus strain CB 48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.