Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
ADU13674.1SMART: PDZ/DHR/GLGF domain protein; TIGRFAM: protease Do; KEGG: pzu:PHZ_c2689 serine protease HtrA; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; Belongs to the peptidase S1C family. (498 aa)    
Predicted Functional Partners:
ADU12106.1
PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: nar:Saro_2398 peptidase S1 and S6, chymotrypsin/Hap.
  
 
 
0.926
ADU13156.1
PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: svi:Svir_36080 trypsin-like serine protease with C-terminal PDZ domain protein.
     
  0.900
ADU12555.1
PFAM: OmpA/MotB domain protein; KEGG: OmpA/MotB domain-containing protein.
    
 
 0.641
rplY
Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
 
 
   0.493
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
  
 0.468
ADU13675.1
Cytochrome C biogenesis protein; Possible subunit of a heme lyase.
       0.456
ADU13676.1
PFAM: cytochrome c assembly protein; KEGG: pzu:PHZ_c2691 cytochrome c-type biogenesis protein CycK.
       0.453
ccmE
CcmE/CycJ protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family.
       0.453
rplK
Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
    
   0.442
rpsQ
30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
  
 
   0.438
Your Current Organism:
Asticcacaulis excentricus
NCBI taxonomy Id: 573065
Other names: A. excentricus CB 48, Asticcacaulis excentricus ATCC 15261, Asticcacaulis excentricus CB 48, Asticcacaulis excentricus DSM 4724, Asticcacaulis excentricus str. CB 48, Asticcacaulis excentricus strain CB 48
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