STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU13825.1KEGG: jan:Jann_2593 DeoR family transcriptional regulator; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR. (282 aa)    
Predicted Functional Partners:
ADU13826.1
PFAM: Carbohydrate kinase, FGGY-like; KEGG: fucK; L-fuculokinase.
 
  
 0.889
ADU13827.1
L-rhamnose catabolism isomerase; KEGG: rle:pRL110416 putative rhamnose isomerase involved in competition for nodulation; TIGRFAM: L-rhamnose catabolism isomerase; PFAM: Xylose isomerase domain-containing protein TIM barrel.
 
     0.769
ADU11817.1
PTS IIA-like nitrogen-regulatory protein PtsN; KEGG: pzu:PHZ_c0181 PTS system, nitrogen regulatory IIA component PtsN; TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2.
 
  
 0.642
rhaM
L-rhamnose 1-epimerase; Involved in the anomeric conversion of L-rhamnose.
 
  
 0.589
ADU13783.1
PFAM: Ribose/galactose isomerase; Sugar-phosphate isomerase-like; KEGG: sal:Sala_3034 hypothetical protein.
  
  
 0.518
ADU13780.1
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: yen:YE1884 putative sugar ABC transporter (permease).
 
   
 0.449
ADU13634.1
KEGG: bid:Bind_2696 3-hydroxybutyrate dehydrogenase; TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
    0.431
ADU13364.1
TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; KEGG: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase.
 
    0.424
Your Current Organism:
Asticcacaulis excentricus
NCBI taxonomy Id: 573065
Other names: A. excentricus CB 48, Asticcacaulis excentricus ATCC 15261, Asticcacaulis excentricus CB 48, Asticcacaulis excentricus DSM 4724, Asticcacaulis excentricus str. CB 48, Asticcacaulis excentricus strain CB 48
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