STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU13895.1KEGG: bxe:Bxe_A1759 putative type IV secretion system protein VirB8/TraJ. (246 aa)    
Predicted Functional Partners:
ADU13898.1
KEGG: bpy:Bphyt_0163 type IV secretion/conjugal transfer ATPase, VirB4 family; TIGRFAM: type IV secretion/conjugal transfer ATPase, VirB4 family; PFAM: CagE, TrbE, VirB component of type IV transporter system, conserved region.
 
 
 0.990
ADU13893.1
PFAM: conjugation TrbI family protein; KEGG: mrd:Mrad2831_6332 conjugation TrbI family protein.
 
  
 0.980
ADU13894.1
PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: bpy:Bphyt_6499 conjugal transfer protein TrbG/VirB9/CagX.
 
  
 0.980
ADU13897.1
PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: xfa:XFa0011 conjugal transfer protein.
  
  
 0.974
ADU13892.1
TIGRFAM: P-type DNA transfer ATPase VirB11; PFAM: type II secretion system protein E; KEGG: bpy:Bphyt_6497 P-type DNA transfer ATPase VirB11; SMART: AAA ATPase.
 
  
 0.966
ADU13899.1
KEGG: bch:Bcen2424_3314 type IV secretory pathway, VirB3 family protein; manually curated; PFAM: type IV secretory pathway VirB3 family protein.
  
 
 0.963
ADU13900.1
PFAM: Conjugal transfer protein TrbC; KEGG: net:Neut_2638 hypothetical protein.
  
  
 0.959
ADU13005.1
KEGG: eli:ELI_03225 type IV secretion system protein B4, putative; TIGRFAM: type IV secretion/conjugal transfer ATPase, VirB4 family; PFAM: CagE, TrbE, VirB component of type IV transporter system, conserved region.
 
 
 0.958
ADU13004.1
PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: eli:ELI_03230 hypothetical protein.
 
  
 0.937
ADU13003.1
PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: ccs:CCNA_02503 type IV secretory pathway, VirB9 channel protein.
 
  
 0.918
Your Current Organism:
Asticcacaulis excentricus
NCBI taxonomy Id: 573065
Other names: A. excentricus CB 48, Asticcacaulis excentricus ATCC 15261, Asticcacaulis excentricus CB 48, Asticcacaulis excentricus DSM 4724, Asticcacaulis excentricus str. CB 48, Asticcacaulis excentricus strain CB 48
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