STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU14054.1KEGG: cti:RALTA_B2196 conserved hypothetical protein; putative exported protein. (487 aa)    
Predicted Functional Partners:
ADU12240.1
PFAM: Amidohydrolase 3; KEGG: amidohydrolase 3.
 
     0.769
ADU14055.1
PFAM: major facilitator superfamily MFS_1; KEGG: hba:Hbal_2570 major facilitator superfamily MFS_1.
       0.757
ADU12241.1
PFAM: isochorismatase hydrolase; KEGG: azl:AZL_b04960 isochorismatase superfamily hydrolase.
 
     0.741
ADU14056.1
PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; Extradiol ring-cleavage dioxygenase LigAB LigA subunit; KEGG: ppf:Pput_3200 protocatechuate 4,5-dioxygenase.
       0.566
ADU14053.1
RNA polymerase, sigma-24 subunit, ECF subfamily; Manually curated; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; KEGG: ppg:PputGB1_1521 ECF subfamily RNA polymerase sigma-24 factor; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein.
       0.459
ADU14490.1
PFAM: outer membrane chaperone Skp (OmpH); KEGG: ccs:CCNA_01991 hypothetical protein.
    
 
 0.404
Your Current Organism:
Asticcacaulis excentricus
NCBI taxonomy Id: 573065
Other names: A. excentricus CB 48, Asticcacaulis excentricus ATCC 15261, Asticcacaulis excentricus CB 48, Asticcacaulis excentricus DSM 4724, Asticcacaulis excentricus str. CB 48, Asticcacaulis excentricus strain CB 48
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