STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lysSTIGRFAM: lysyl-tRNA synthetase; KEGG: lysyl-tRNA synthetase; PFAM: Lysyl-tRNA synthetase, class Ic; Belongs to the class-I aminoacyl-tRNA synthetase family. (555 aa)    
Predicted Functional Partners:
ADU13374.1
PFAM: protein of unknown function DUF1013; KEGG: hypothetical protein.
  
    0.783
ADU13413.1
PFAM: Stringent starvation protein B; KEGG: hypothetical protein.
  
     0.686
ADU11855.1
PFAM: import inner membrane translocase subunit Tim44; KEGG: pzu:PHZ_c0007 hypothetical protein.
  
     0.668
ADU12771.1
Manually curated; PFAM: helicase domain protein; KEGG: pzu:PHZ_c0710 superfamily II DNA and RNA helicase; SMART: helicase domain protein.
  
     0.598
nadK
ATP-NAD/AcoX kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.
  
     0.594
tyrS
tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily.
  
  
 0.565
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.549
ADU14275.1
PFAM: beta-lactamase; KEGG: sml:Smlt4211 putative beta-lactamase protein.
       0.547
ADU12763.1
Cobalt chelatase, pCobT subunit; SMART: von Willebrand factor type A; TIGRFAM: cobalt chelatase, pCobT subunit; KEGG: ccs:CCNA_00708 cobaltochelatase CobT subunit; PFAM: Cobalt chelatase CobT subunit.
  
     0.538
rpsD
Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
  
    0.535
Your Current Organism:
Asticcacaulis excentricus
NCBI taxonomy Id: 573065
Other names: A. excentricus CB 48, Asticcacaulis excentricus ATCC 15261, Asticcacaulis excentricus CB 48, Asticcacaulis excentricus DSM 4724, Asticcacaulis excentricus str. CB 48, Asticcacaulis excentricus strain CB 48
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