STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK96363.1TonB-linked outer membrane protein, SusC/RagA family. (1094 aa)    
Predicted Functional Partners:
SEK96414.1
Starch-binding associating with outer membrane.
 
     0.918
SEM40551.1
Starch-binding associating with outer membrane.
  
     0.774
SEM65214.1
Starch-binding associating with outer membrane.
  
     0.766
SEK42050.1
Starch-binding associating with outer membrane.
  
     0.754
SEK96315.1
FecR family protein.
 
    0.648
SEN14695.1
SusD family protein.
  
     0.559
SEM94389.1
Starch-binding associating with outer membrane.
  
     0.546
SEL42416.1
TonB protein C-terminal.
  
   0.539
SEL56074.1
Starch-binding associating with outer membrane.
  
     0.512
SEL58131.1
TonB family C-terminal domain-containing protein.
  
   0.502
Your Current Organism:
Chitinophaga rupis
NCBI taxonomy Id: 573321
Other names: C. rupis, Chitinophaga rupis Lee et al. 2009, Chitinophaga sp. CS5-B1, DSM 21039, KCTC 22170, strain CS5-B1
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